Prior to this task:
✔ ChemCharts Chemistry visualization must be added.
| 1️⃣ Chemistry visual ➡ select | |
| 2️⃣ Chemistry visual ➡ select | |
| 3️⃣ R-Group decomposition window ➡ draw structure(s) as Core | |
4️⃣ R-Group decomposition window ➡ select
| |
| 5️⃣ R-Group decomposition window ➡ select |
Supporting Knowledge
Note: Results are added to the same data table as input structures, with matching cores in a Core column and R-Groups in sequentially numbered R# columns. Output formats include both Molfile (preserving original orientation) and SMILES.
Core Definition Options: Cores can be entered with undefined or user-defined R-Group positions. When undefined, positions are automatically identified based on input structures. User-defined positions provide control over R-Group output column ordering.
- Only match R-Group atoms defined in core restricts matching to only user-defined positions (requires at least one defined position), excluding structures with R-Groups at other positions.
- Allow fragmented single core enables decomposition on disconnected cores, requiring structures to match all sketched fragments.
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